Monte carlo on biomolecules

[mms]

Hi Prof. Dubbeldam,

I am new to RASPA, so so please forgive any oversights and ignorance from my part.

Can raspa do monte carlo simulations on biomolecules like protein or rna? I want to study the binding of ions using Monte carlo. If not, can you please suggest me another software?

[David Dubbeldam]

No, that is not possible. Usually docking software is used for that. I would look into 'gromacs' for biomolecules as a start.