Hi Prof. Dubbeldam,
I am new to RASPA, so so please forgive any oversights and ignorance from my part.
Can raspa do monte carlo simulations on biomolecules like protein or rna? I want to study the binding of ions using Monte carlo. If not, can you please suggest me another software?
No, that is not possible. Usually docking software is used for that. I would look into 'gromacs' for biomolecules as a start.